Table 1 Comparison of the extracellular proteins of R. etli; identified in the exponential growth phase (6 h) and the stationary growth phase (24 h)
From: The extracellular proteome of Rhizobium etli CE3 in exponential and stationary growth phase
COGs | prot 6 h (%) | prot 6 h (SP) (%) | prot 24 h (%) | prot 24 h (SP) (%) |
|---|---|---|---|---|
Energy production and conversion (C) | 9.8 | 1.0 | 3.1 | - |
Cell cycle control, cell division, chromosome partitioning (D) | 0.5 | - | 0.5 | - |
Amino acid transport and metabolism (E) | 6.7 | 1.0 | 7.3 | 4.7 |
Nucleotide transport and metabolism (F) | 1.0 | - | - | - |
Carbohydrate transport and metabolism (G) | 7.7 | 1.0 | 7.9 | 4.1 |
Coenzyme transport and metabolism (H) | 1.5 | - | 0.5 | - |
Lipid transport and metabolism (I) | 1.0 | - | 0.5 | - |
Translation, ribosomal structure and biogenesis (J) | 22.3 | - | 6.3 | - |
Transcription (K) | 3.1 | - | 3.1 | - |
Replication, recombination and repair (L) | 3.6 | - | 5.2 | 0.5 |
Cell wall, membrane, envelope biogenesis (M) | 5.1 | 1.5 | 7.3 | 3.7 |
Cell motility (N) | 3.6 | 1.5 | 2.0 | 0.5 |
Posttranslational modification, protein turnover, chaperones (O) | 8.8 | 1.0 | 6.8 | 1.0 |
Inorganic ion transport and metabolism (P) | 3.1 | 0.5 | 5.7 | 3.7 |
Secondary metabolites biosynthesis, transport and catabolism (Q) | 2.6 | 0.5 | 0.5 | - |
General function prediction only (R) | 2.0 | - | 3.6 | 1.6 |
Function unknown (S) | 3.6 | 1.5 | 28.8 | 11.0 |
Signal transduction mechanisms (T) | 3.1 | 1.0 | 1.0 | - |
Intracellular trafficking, secretion, and vesicular transport (U) | 4.1 | 0.5 | 1.5 | 1.6 |
Defense mechanisms (V) | 1.5 | - | 1.0 | - |
Without COG (WC) | 4.1 | 1.5 | 6.2 | 3.1 |
Total protein | 192 | 25 | 191 | 68 |