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Table 1 Identified proteins from the strawberry stolon I-1 internode

From: Comparative proteomics analysis of proteins expressed in the I-1 and I-2 internodes of strawberry stolons

Spot No. a Protein Accession Number b Molecular Function c Reference Organism Theoretical kDa/pI d Experimental kDa/pI e Score f SC g (%) Matched/Unmatched queries h
  Metabolism         
15 Malate dehydrogenase P83373 L-malate dehydrogenase activity Fragaria ananassa 35.8/8.7 13.5/5.3 99 41 9/43
29 Glucan endo-1,3-beta-glucosidase 6 Q93Z08 glucan endo-1,3-beta-D-glucosidase activity Arabidopsis thaliana 52.6/5.6 20.3/5.8 58 27 6/35
31 Glucan endo-1,3-beta-glucosidase 6 Q93Z08 glucan endo-1,3-beta-D-glucosidase activity Arabidopsis thaliana 52.6/5.6 20.4/5.0 63 21 5/42
40 Uricase O04420 urate oxidase activity Arabidopsis thaliana 35.0/8.6 23.4/6.1 58 38 10/107
42 GDSL esterase/lipase At4g16220 O23469 hydrolase activity, acting on ester bonds Arabidopsis thaliana 26.7/8.9 23.2/7.8 57 37 6/36
90 Malate dehydrogenase, mitochondrial P83373 L-malate dehydrogenase activity Fragaria ananassa 35.8/8.7 40.3/8.2 122 51 10/50
91 Malate dehydrogenase, mitochondrial P83373 L-malate dehydrogenase activity Fragaria ananassa 35.8/8.7 43.3/8.3 100 50 9/45
111 S-adenosylmethionine synthase Q8W3Y4 metal ion binding Phaseolus lunatus 43.5/5.6 47.4/5.8 74 24 7/9
118 2,3-bisphosphoglycerate-independent phosphoglycerate mutase P30792 manganese ion binding Zea mays 60.7/5.2 41.3/4.9 59 24 8/27
133 Fructokinase-1 A2WXV8 ATP binding Oryza sativa 34878/5.1 36.1/3.8 76 23 6/15
142 S-adenosylmethionine synthase 4 A9PHC5 metal ion binding Populus trichocarpa 42999/5.7 46.5/6.3 74 18 5/2
162 Phosphoglucomutase P93804 magnesium ion binding Zea mays 63286/5.4 60.2/6.1 63 17 9/30
  Energy         
152 ATP synthase subunit beta, chloroplastic Q9MRR9 ATP binding Brasenia schreberi 53.8/5.2 45.3/4.8 76 27 8/19
153 ATP synthase subunit beta Q01859 ATP binding Oryza sativa 59.0/5.9 48.1/5.4 134 44 19/45
155 ATP synthase subunit beta Q6QBP2 ATP binding Castanea sativa 53.8/5.3 45.9/4.4 108 37 15/26
156 ATP synthase subunit alpha A4QJA0 ATP binding Aethionema cordifolium 55.3/5.2 58.5/3.5 114 22 10/13
  Photosynthesis         
2 Ribulose bisphosphate carboxylase small chain 1A P10795 monooxygenase activity Arabidopsis thaliana 20.5/7.6 10.7/7.8 62 43 7/101
37 Ribulose bisphosphate carboxylase large chain (Fragment) O98681 ribulose-bisphosphate carboxylase activity Zamioculcas zamiifolia 49.9/6.3 21.4/4.9 79 25 10/78
46 Ribulose bisphosphate carboxylase large chain P28439 magnesium ion binding Pelargonium hortorum 53.3/6.3 23.7/7.5 62 32 13/104
69 Triosephosphate isomerase Q9M4S8 triose-phosphate isomerase activity Fragaria ananassa 33.7/7.6 30.0/5.1 152 55 19/112
72 Triosephosphate isomerase Q9M4S8 triose-phosphate isomerase activity Fragaria ananassa 33.7/7.6 31.3/5.6 126 59 16/77
126 Oxygen-evolving enhancer protein 1 P26320 calcium ion binding Solanum tuberosum 35.6/5.8 35.6/4.4 111 33 8/8
127 Oxygen-evolving enhancer protein 1 P26320 calcium ion binding Solanum tuberosum 35.6/5.8 34.9/4.8 113 28 9/21
  Transcription         
6 Histone acetyltransferase GCN5 Q9AR19 protein binding Arabidopsis thaliana 63.5/6.0 14.2/4.1 59 29 11/66
18 Pentatricopeptide repeat-containing protein At3g09650 Q9SF38 nucleotide binding Arabidopsis thaliana 84.4/6.5 11.2/6.2 80 23 14/49
27 Transcription factor bHLH145 Q9FGB0 DNA binding Arabidopsis thaliana 35.2/5.1 18.3/5.1 62 28 10/63
92 DNA-directed RNA polymerase subunit beta B1VKH5 DNA-directed RNA polymerase activity Cryptomeria japonica 139.6/9.4 44.6/8.1 59 12 11/65
136 DNA polymerase P10582 3'-5' exonuclease activity Zea mays 108.2/8.6 55.3/8.5 58 15 8/23
  Protein synthesis         
154 50S ribosomal protein L33 B2LML4 structural constituent of ribosome Guizotia abyssinica 7.8/9.7 56.4/5.1 62 42 5/11
  Protein folding, degradation and assembly         
45 Heat shock protein 81-3 P51818 ATP binding Arabidopsis thaliana 80.2/5.0 26.7/8.2 59 19 9/85
73 Proteasome subunit alpha type-6 O48551 threonine-type endopeptidase activity Glycine max 27.5/5.8 28.3/6.1 58 31 6/62
  Transport         
23 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS A6MMH1 oxidoreductase activity, acting on NADH or NADPH Chloranthus spicatus 45.8/5.4 18.5/7.3 75 26 12/66
52 Ras-related protein ARA-4 P28187 GTP binding Arabidopsis thaliana 24.1/5.0 28.6/8.4 61 28 10/101
  Stress Related         
62 Putative F-box/kelch-repeat protein At4g19330 O65704 N/A Arabidopsis thaliana 62.9/7.1 27.3/5.7 59 25 10/82
151 Putative F-box/kelch-repeat protein At4g19330 O65704 N/A Arabidopsis thaliana 62.8/7.1 44.3/4.8 65 21 8/75
  Development         
53 3-ketoacyl-CoA synthase 5 Q9C6L5 fatty acid elongase activity Arabidopsis thaliana 56.3/9.0 27.7/8.1 61 40 12/19
81 Cytoplasmic dynein 2 heavy chain 1 Q9SMH5 ATP binding Chlamydomonas reinhardtii 483.5/6.1 40.0/8.6 58 7 22/48
  Unknown         
8 Embryonic abundant protein VF30.1 OS = Vicia faba PE = 2 SV = 1 P21745 N/A Vicia faba 30.1/6.4 18.1/4.2 67 33 7/67
  1. aAs indicated in Figure 2. bSwissprot database accession number. cMolecular functions were inferred from those reported in the UniProt database. dTheoretical isoelectric point and molecular mass. eExperimental isoelectric point and molecular mass. fMascot score. gSequence coverage. hNumber of matched and unmatched peptides.