Table 5 Profile-Alignment time and subcellular localization accuracy for different sequence cut-off positions in Scheme II. In the first column, “Full length” means that no sequence truncation was applied. “TargetP(P)” and “Tar-getP(N)” mean that the cutoff position is determined by TargetP using the “Plant” option and “Non-plant” option, respectively. CSitePred is a cleavage site predictor based on conditional random fields.
From: Fast subcellular localization by cascaded fusion of signal-based and homology-based methods
Seq. Cutoff position | Alignment Time for Each Profile (sec.) | Subcellular Localization Accuracy (%) |
|---|---|---|
Full length | 34.7 | 91.64 |
170 | 4.7 | 90.98 |
Ground-truth | 1.9 | 98.31 |
Determined by TargetP(P) | 1.8 | 89.08 |
Determined by TargetP(N) | 1.7 | 93.14 |
Determined by CSitePred | 1.9 | 91.45 |