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Table 3 List of differentially expressed proteins in small intestinal mucosal samples from treatment group and control group

From: Proteome changes in the small intestinal mucosa of broilers (Gallus gallus) induced by high concentrations of atmospheric ammonia

Accession a Description b Gene symbol Theoretical MW c /pI d Score e Pep. no. f Log 2 fold change g P- value Biological process GO term
Energy metabolism         
F1NTZ0 Uncharacterized protein (Fragment) OS = Gallus gallus GN = ADH6 PE = 3 SV = 2 - [F1NTZ0_CHICK] ADH6 39.5/7.49 565.75 14 −0.60 0.0162 Oxidoreductase activity
R4GI36 Phosphoenolpyruvate carboxykinase, cytosolic [GTP] OS = Gallus gallus GN = PCK1 PE = 3 SV = 1 - [R4GI36_CHICK] PCK1 61.3/7.75 64.06 2 −0.35 0.0038 Gluconeogenesis
P07322 Beta-enolase OS = Gallus gallus GN = ENO3 PE = 1 SV = 3 - [ENOB_CHICK] ENO3 47.2/7.61 259.39 5 −0.29 0.0497 Gluconeogenesis
E1C4U7 Uncharacterized protein OS = Gallus gallus GN = NDUFB3 PE = 4 SV = 1 - [E1C4U7_CHICK] NDUFB3 11.1/9.82 35.42 1 0.39 0.0179 Electron transport chain
E1BQJ6 Uncharacterized protein OS = Gallus gallus PE = 3 SV = 2 - [E1BQJ6_CHICK]   257.7/5.17 23.38 1 0.87 0.0490 ATP binding
Q9YHT1 Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS = Gallus gallus GN = SDHA PE = 1 SV = 2 - [SDHA_CHICK] SDHA 72.9/7.08 773.5 18 1.02 0.0211 Succinate dehydrogenase (ubiquinone) activity
F1NZI4 Uncharacterized protein OS = Gallus gallus GN = ATHL1 PE = 4 SV = 2 - [F1NZI4_CHICK] ATHL1 77/5.73 30.07 1 1.15 0.0239 Catalytic activity
Lipid metabolism         
Q2MJT5 Fatty acid translocase OS = Gallus gallus PE = 2 SV = 1 - [Q2MJT5_CHICK] CD36 52.6/8.37 110.81 4 −0.45 0.0471 Lipid uptake
E1BS15 Uncharacterized protein OS = Gallus gallus GN = ACSF2 PE = 4 SV = 2 - [E1BS15_CHICK] ACSF2 68.7/8.7 441.08 15 −0.33 0.0192 Fatty acids catalytic activity
Amino acid metabolism         
P00368 Glutamate dehydrogenase 1, mitochondrial OS = Gallus gallus GN = GLUD1 PE = 1 SV = 1 - [DHE3_CHICK] GLUD1 55.7/8.28 641.29 19 −0.50 0.0155 Glutamate dehydrogenase [NAD(P)+] activity
F1P3F9 Glutamate dehydrogenase OS = Gallus gallus GN = GLUD1 PE = 3 SV = 2 - [F1P3F9_CHICK] GLUD1 47.6/8.18 695.44 19 −0.39 0.0288 Glutamate dehydrogenase [NAD(P)+] activity
Vitamin metabolism         
F1P4K4 Uncharacterized protein OS = Gallus gallus GN = ALDH8A1 PE = 3 SV = 2 - [F1P4K4_CHICK] ALDH8A1 53.2/7.83 31.26 1 −0.54 0.0080 9-cis-retinoic acid biosynthetic process
Cell cytoskeleton         
Q90WF1 Filamin OS = Gallus gallus PE = 2 SV = 1 - [Q90WF1_CHICK] FLNA 272.8/6.35 103.29 2 −0.72 0.0018 Actin-binding
D2Z1L9 LIM and SH3 protein 1 OS = Gallus gallus GN = LASP1 PE = 2 SV = 1 - [D2Z1L9_CHICK] LASP1 29.6/7.4 417.26 11 −0.43 0.0284 Zinc ion binding
Cell growth and proliferation         
R4GF89 Uncharacterized protein OS = Gallus gallus GN = SFN PE = 3 SV = 1 - [R4GF89_CHICK] SFN 27.7/5.01 114.99 3 −0.54 0.0239 Positive regulation of cell growth
E1B Uncharacterized protein OS = Gallus RP 14.9/1 286. 8 −0.46 0.0 Structural
Y89 gallus GN = RPL23 PE = 3 SV = 2 - [E1BY89_CHICK] L23 0.51 2    019 constituent of ribosome
F1NQS9 Uncharacterized protein OS = Gallus gallus GN = ZNF598 PE = 4 SV = 2 - [F1NQS9_CHICK] ZNF598 99.6/8.57 28.5 1 −0.42 0.0041 Zinc ion binding
E1BTA6 Uncharacterized protein OS = Gallus gallus GN = SEPT12 PE = 3 SV = 2 - [E1BTA6_CHICK] SEPT12 47.1/8.68 52.61 2 −0.33 0.0202 GTP binding
Transcriptional and translational regulation         
F1P0C0 Uncharacterized protein OS = Gallus gallus GN = HMGN1 PE = 4 SV = 1 - [F1P0C0_CHICK] HMGN1 11.1/9.26 68.36 1 −0.55 0.0223 Chromatin binding
E1C9F0 Uncharacterized protein OS = Gallus gallus GN = DYNC2H1 PE = 4 SV = 2 - [E1C9F0_CHICK] DYNC2H1 491.7/6.43 22.2 1 −0.50 0.0062 Protein processing
E1BT82 Uncharacterized protein OS = Gallus gallus GN = EIF2S2 PE = 2 SV = 1 - [E1BT82_CHICK] EIF2S2 37.9/6.13 71.23 4 −0.44 0.0040 Translation initiation factor activity
Q5ZJ39 Density-regulated protein OS = Gallus gallus GN = DENR PE = 2 SV = 1 - [DENR_CHICK] DENR 22.1/5.21 60.49 1 −0.41 0.0080 Translation initiation factor activity
F1NS60 Uncharacterized protein (Fragment) OS = Gallus gallus GN = MMS19 PE = 4 SV = 2 - [F1NS60_CHICK] MMS19 111.8/5.99 55.46 1 −0.38 0.0038 Transcription coactivator activity
E1C4N0 Uncharacterized protein OS = Gallus gallus GN = RPS10 PE = 4 SV = 2 - [E1C4N0_CHICK] RPS10 18.9/10.15 183.89 6 −0.36 0.0068 Structural constituent of ribosome
R4GL23 Uncharacterized protein OS = Gallus gallus GN = CHTOP PE = 4 SV = 1 - [R4GL23_CHICK] CHTOP 26.3/12.23 83.09 2 −0.30 0.0036 Transcription export complex
F1NLT8 Uncharacterized protein (Fragment) OS = Gallus gallus GN = ARHGDIB PE = 4 SV = 1 - [F1NLT8_CHICK] ARHGDIB 23.2/5.2 235.16 7 −0.29 0.0435 Rho GDP-dissociation inhibitor activity
F1NA55 Eukaryotic translation initiation factor 2A OS = Gallus gallus GN = EIF2A PE = 2 SV = 2 - [F1NA55_CHICK] EIF2A 62.7/8.79 62.63 1 0.27 0.0449 Translation initiation factor activity
Q800W4 TIA-1 OS = Gallus gallus GN = TIA1 PE = 2 SV = 1 - [Q800W4_CHICK] TIA1 41.3/7.72 62.06 1 0.29 0.0074 Nucleotide binding
Immune response         
P40618 High mobility group protein B3 OS = Gallus gallus GN = HMGB3 PE = 2 SV = 3 - [HMGB3_CHICK] HMGB3 23/8.12 126.17 4 −0.59 0.0009 DNA binding
Q9YH06 High mobility group protein B1 OS = Gallus gallus GN = HMGB1 PE = 1 SV = 1 - [HMGB1_CHICK] HMGB1 24.9/5.74 165.42 6 −0.44 0.0084 DNA binding
E1C9I0 Unconventional myosin-Ig OS = Gallus gallus GN = MYO1G PE = 4 SV = 2 - [E1C9I0_CHICK] MYO1G 115/8.78 203.91 7 −0.47 0.0410 Nucleotide-binding(motor activity)
E1BTE2 Uncharacterized protein OS = Gallus gallus GN = SERPINB5 PE = 3 SV = 2 - [E1BTE2_CHICK] SERPINB5 42.6/5.96 218.9 7 −0.40 0.0017 Serine-type endopeptidase inhibitor activity
Q90643 Interferon regulatory factor 3 OS = Gallus gallus GN = IRF3 PE = 2 SV = 1 - [IRF3_CHICK] IRF3 54.4/5.21 45.52 2 −0.33 0.0460 Activation of innate immune response
E1BWS0 Uncharacterized protein OS = Gallus gallus GN = GIT2 PE = 4 SV = 2 - [E1BWS0_CHICK] GIT2 84.5/6.98 29.12 1 −0.32 0.0461 ARF GTPase activator activity
E1BUY6 Uncharacterized protein OS = Gallus gallus GN = HMHA1 PE = 4 SV = 2 - [E1BUY6_CHICK] HMHA1 103.3/7.97 29.79 1 −0.31 0.0080 GTPase activator activity
E1BVP2 Uncharacterized protein OS = Gallus gallus GN = PLD1 PE = 4 SV = 2 - [E1BVP2_CHICK] PLD1 118.9/8.98 50.12 2 −0.27 0.0397 Defense response to Gram-positive bacterium
Apoptosis         
I3VQH4 Interleukin enhancer binding factor 3-like protein OS = Gallus gallus GN = ILF3 PE = 2 SV = 1 - [I3VQH4_CHICK] ILF3 95/8.81 68.88 3 0.30 0.0025 Participate in the apoptosis
R4GLP0 Uncharacterized protein OS = Gallus gallus GN = COX7C PE = 4 SV = 1 - [R4GLP0_CHICK] COX7C 7.2/10.96 27.81 1 0.55 0.0380 Cytochrome-c oxidase activity
F1NIC5 Uncharacterized protein (Fragment) OS = Gallus gallus GN = TIMM8A PE = 4 SV = 2 - [F1NIC5_CHICK] TIMM8A 12.2/7.78 135.92 4 0.57 0.0346 Protein transport (metal ion binding)
Oxidative stress         
H9L201 Uncharacterized protein OS = Gallus gallus GN = PNKD PE = 3 SV = 2 - [H9L201_CHICK] PNKD 48/9.35 31.96 1 −0.46 0.0095 Glutathione biosynthetic process
F1NQC3 Glutamine synthetase OS = Gallus gallus GN = GLUL PE = 3 SV = 2 - [F1NQC3_CHICK] GLUL 46.5/7.72 479.53 13 −0.40 0.0483 Glutamate-ammonia ligase activity
P08267 Ferritin heavy chain OS = Gallus gallus GN = FTH PE = 2 SV = 2 - [FRIH_CHICK] FTH 21.1/6.21 311.58 8 0.34 0.0248 Ferroxidase activity
Neurotoxicity         
F1P4B2 Protein piccolo (Fragment) OS = Gallus gallus GN = PCLO PE = 4 SV = 2 - [F1P4B2_CHICK] LOC768552 560.2/6.77 33.63 1 0.62 0.0247 cAMP-mediated signaling
  1. aUniprot_Gallus gallus_9031 database accession number.
  2. bThe name of the protein exclusive of the identifier that appears in the database.
  3. cTheoretical molecular mass (kDa).
  4. dTheoretical pI.
  5. eThe sum of the scores of the individual peptides.
  6. fThe number of distinct peptide sequences in the protein group.
  7. gDifferential protein expression in the treatment group was presented as a log2 fold change relative to the control group.