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Table 2 Classification and metabolic functions of proteins detected in this study. Proteins in italic are involved in glycolysis

From: Comparison of enzymatic activities and proteomic profiles of Butyrivibrio fibrisolvens grown on different carbon sources

Name Enzyme Nomenclature Class Metabolic pathway (KEGG) Function Reference
diaminopimelate dehydrogenase 3.5.1.28 hydrolases lysine biosynthesis. Metabolic pathway, Biosynthesis of secondary metabolisms, Biosynthesis of amino acids cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls Gao et al., 2017 [39]
glucose-6-phosphate isomerase 5.3.1.9 isomerases glycolysis/Gluconeogenesis, Pentose phosphate pathway, Starch and sucrose metabolisms, Amino sugar and nucleotide sugar metabolisms, Metabolic pathway, Biosynthesis of secondary metabolisms, Microbial metabolism in diverse environments, Biosynthesis antibiotics, Carbon metabolisms catalyses the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate Verhees et al., 2001 [40]
N-acetylmuramoyl-L-alanine amidase 3.5.1.28 hydrolases cationic antimicrobial peptide CAMP (resistance) cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls (preferentially: D-lactyl-L-Ala) Loessner et al., 1995 [41]
1-phosphofructokinase 2.7.2.56 transferases glycolysis/Gluconeogenesis, Metabolic pathway Biosynthesis of secondary metabolites, Microbial metabolism in diverse environments, Biosynthesis of antibiotics, Carbon metabolism, Biosynthesis of amino acids catalysed the transfer of a phosphoryl group from adenosinetriphosphate to fructuose-6-phosphate to obtain adenosinetriphosphate and fructose-1,6-bisphophate Kimmel et al., 2000 [42]
1-phosphoglycerate kinase 2.7.1.56 transferases glycolysis/Gluconeogenesis, Metabolic pathway Biosynthesis of secondary metabolites, Microbial metabolism in diverse environments, Biosynthesis of antibiotics, Carbon metabolism, Biosynthesis of amino acids conversion of 1,3-bisphosphate glycerate to 3-phosphoglycerate Yon et al., 1990 [43]
beta-hydroxybutyryl-CoA dehydrogenase 1.1.1.157 oxidoreductases – catalyses the third step in the β-oxidation cycle, production of butyrate Taylor et al., 2010[44]
fructose-bisphosphate aldolase, class II 4.1.2.13 lyases glycolysis/Glycogenesis, Pentose phosphate pathway, Fructose and mannose metabolism, Methane metabolism, Metabolic pathway, Biosynthesis of secondary metabolites, Microbial metabolism in diverse environments, Biosynthesis of antibiotics, Carbon metabolism, Biosynthesis of amino acids catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate Thomson et al., 1998 [45]
elongation factor Ts – – – catalyses the enzymatic binding of aminoacylt-RNA to ribosomes Schwartzbach and Spermulli, 1989 [46]
glyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 oxidoreductases – responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilise NAD (EC:1.2.1.12), NADP (EC:1.2.1.13) or either (EC:1.2.1.59) Fillinger et al., 2000 [47]
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase 2.5.1.54 transferases phenylalanine, tyrosine and tryptophan biosynthesis, Metabolic pathway, Biosynthesis of secondary metabolites, Biosynthesis of antibiotics, Biosynthesis of amino acids, Quorum sensing catalyses the metabolic reactions called the shikimate pathway responsible for the biosynthesis of the amino acids phenylalanine, tyrosine, and tryptophan Hermann, 2001 [48]
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Proteome Science

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