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Fig. 2 | Proteome Science

Fig. 2

From: Comparison of false-discovery rates of various decoy databases

Fig. 2

Comparison of the numbers of PSMs of various databasesĀ of large size (six-frame translation). The blue bars show the numbers of PSMs for 1% FDR. The orange bars show the numbers of PSMs for 1% FDR using Factor2. The gray bars show the numbers of PSMs for 1% FDR using Factor 1. The yellow line show the ratio of target and decoy unique peptide ratio. a The S. cerevisiae six frame translation protein database and S. cerevisiae Elite dataset. b The human six frame translation protein database and the HEK293 3-Replicate dataset. a The S. cerevisiae six frame translation protein database and S. cerevisiae 2DLC dataset. b The human six frame translation protein database and the HEK293 24-Fraction dataset

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