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  1. The target-decoy strategy effectively estimates the false-discovery rate (FDR) by creating a decoy database with a size identical to that of the target database. Decoy databases are created by various methods,...

    Authors: Sangjeong Lee, Heejin Park and Hyunwoo Kim
    Citation: Proteome Science 2021 19:11
  2. Tibetan pigs (TP) exhibit heritable adaptations to their hypoxic environments as a result of natural selection. However, candidate proteins that affect the sperm quality of boars on plateaus have not yet been ...

    Authors: Yanling Zhao, Yaomei Wang, Feipeng Guo, Bo Lu, Jiale Sun, Jianzhou Wang and Zili Ren
    Citation: Proteome Science 2021 19:9
  3. Kiwifruit (Actinidia chinensis var. Chinensis) is abundant with vitamin C and is a rapidly developing crop in China, New Zealand, and other countries. It has been widely used as a raw material for food and kiwifr...

    Authors: Yu Zhang, Yuexing Wang, Wanying Zhou, Shimao Zheng and Wenhui Zhang
    Citation: Proteome Science 2021 19:8
  4. The black soldier fly (Hermetia illucens) has significant economic potential. The larvae can be used in financially viable waste management systems, as they are voracious feeders able to efficiently convert low-q...

    Authors: Yu-Bo Lin, Jing-Jing Rong, Xun-Fan Wei, Zhuo-Xiao Sui, Jinhua Xiao and Da-Wei Huang
    Citation: Proteome Science 2021 19:7
  5. Spotted stem borer- Chilo partellus - a Lepidopteran insect pest of Sorghum bicolor is responsible for major economic losses. It is an oligophagous pest, which bores through the plant stem, causing ‘deadheart’ an...

    Authors: Vaijayanti A. Tamhane, Surhud S. Sant, Abhilash R. Jadhav, Abdul R. War, Hari C. Sharma, Abdul Jaleel and Akanksha S. Kashikar
    Citation: Proteome Science 2021 19:6
  6. Escherichia coli (E. coli) is the principal pathogen that causes biofilm formation. Biofilms are associated with infectious diseases and antibiotic resistance. This study employed proteomic analysis to identify d...

    Authors: Huiyi Song, Ni Lou, Jianjun Liu, Hong Xiang and Dong Shang
    Citation: Proteome Science 2021 19:4
  7. Preterm birth (PTB) is one of major causes of perinatal mortality and neonatal morbidity, but knowledge of its complex etiology is still limited. Here we present cervicovaginal fluid (CVF) protein profiles of ...

    Authors: Young Eun Kim, Kwonseong Kim, Han Bin Oh, Sung Ki Lee and Dukjin Kang
    Citation: Proteome Science 2021 19:3
  8. Apple replant disease (ARD) has been reported from all major fruit-growing regions of the world, and is often caused by biotic factors (pathogen fungi) and abiotic factors (phenolic compounds). In order to cla...

    Authors: Rong Zhang, Weitao Jiang, Xin Liu, Yanan Duan, Li Xiang, Yanfang Wang, Yuanmao Jiang, Xiang Shen, Xuesen Chen, Chengmiao Yin and Zhiquan Mao
    Citation: Proteome Science 2021 19:2
  9. Protein lysine malonylation, a novel post-translational modification (PTM), has been recently linked with energy metabolism in bacteria. Staphylococcus aureus is the third most important foodborne pathogen worldw...

    Authors: Yanan Shi, Jingjing Zhu, Yan Xu, Xiaozhao Tang, Zushun Yang and Aixiang Huang
    Citation: Proteome Science 2021 19:1
  10. Stemazole is a novel small molecule that has been suggested to have the ability to protect multiple stem cells. The proliferation-promoting activity and promising neuroprotective effects of stemazole make it a...

    Authors: Huajun Li, Yubo Zhang, Jing Zhang, Chaoran Zhao, Yizi Zhu and Mei Han
    Citation: Proteome Science 2020 18:12
  11. Tuberculosis (TB) is one of the world’s most problematic infectious diseases. The pathogen Mycobacterium tuberculosis (Mtb) is contained by the immune system in people with latent TB infection (LTBI). No overt di...

    Authors: Takele Teklu, Biniam Wondale, Biruhalem Taye, Milkessa Hailemariam, Shiferaw Bekele, Mesfin Tamirat, Aboma Zewude, Temesgen Mohamed, Girmay Medhin, Mengistu Legesse, Yanbao Yu, Gobena Ameni and Rembert Pieper
    Citation: Proteome Science 2020 18:10
  12. An amendment to this paper has been published and can be accessed via the original article.

    Authors: Ju Bai, Aili He, Chen Huang, Juan Yang, Wanggang Zhang, Jianli Wang, Yun Yang, Pengyu Zhang, Yang Zhang and Fuling Zhou
    Citation: Proteome Science 2020 18:9

    The original article was published in Proteome Science 2014 12:49

  13. Within the complex wheat flour proteome, the gluten proteins have attracted most of the attention because of their importance in determining the functional properties of wheat flour doughs and their roles in h...

    Authors: Susan B. Altenbach, Han-Chang Chang and Annamaria Simon-Buss
    Citation: Proteome Science 2020 18:8
  14. Cerebral microdialysis (CMD) is a minimally invasive technique for sampling the interstitial fluid in human brain tissue. CMD allows monitoring the metabolic state of tissue, as well as sampling macromolecules...

    Authors: Lovisa Tobieson, Zita Czifra, Karin Wåhlén, Niklas Marklund and Bijar Ghafouri
    Citation: Proteome Science 2020 18:7
  15. Protein arginine methylation reaction is catalyzed by protein arginine methyltransferase (PRMT) and the modification is implicated in various diseases including cancer. Currently, thousands of arginine methyla...

    Authors: Yongchul Lim, Ju Yeon Lee, Su Jin Ha, Suyeun Yu, Jung Kyong Shin and Hee Cheol Kim
    Citation: Proteome Science 2020 18:6
  16. Marine medaka is among the most popular models of fish species for ecotoxicology and environmental research and proteomic studies are useful tools for understanding the molecular responses of medaka upon expos...

    Authors: Celia Sze-Nga Kwok, Kaze King-Yip Lai, Sai-Wo Lam, Kin-Ka Chan, Steven Jing-Liang Xu and Fred Wang-Fat Lee
    Citation: Proteome Science 2020 18:5
  17. Members of the family of NEK protein kinases (NIMA-related kinases) were described to have crucial roles in regulating different aspects of the cell cycle. NEK10 was reported to take part in the maintenance of...

    Authors: Andressa Peres de Oliveira, Fernanda Luisa Basei, Priscila Ferreira Slepicka, Camila de Castro Ferezin, Talita D. Melo-Hanchuk, Edmarcia Elisa de Souza, Tanes I. Lima, Valquiria Tiago dos Santos, Davi Mendes, Leonardo Reis Silveira, Carlos Frederico Martins Menck and Jörg Kobarg
    Citation: Proteome Science 2020 18:4
  18. It has been previously shown that doxycycline (Doxy) protects the kidney from preservation injury by inhibition of matrix metalloproteinase. However, the precise molecular mechanism involved in this protection...

    Authors: Michael A. J. Moser, Katherine Sawicka, Jolanta Sawicka, Aleksandra Franczak, Alejandro Cohen, Iwona Bil-Lula and Grzegorz Sawicki
    Citation: Proteome Science 2020 18:3
  19. Traditional studies of the cardiac proteome have mainly investigated in an animal model by two-dimensional gel electrophoresis (2-DE). However, the results have not been of satisfactory quality for an understa...

    Authors: Sun Ha Lim, Jongwon Lee and Mee-Jung Han
    Citation: Proteome Science 2020 18:2
  20. Irritable bowel syndrome (IBS) has been gradually recognized as a disorder of the brain-gut interaction, but the molecular changes in the brain and colon that occur in disease development remain poorly underst...

    Authors: Beihua Zhang, Hong Xue, Wei Wang, Ting Chen, Min Su, Nan Kang, Jianqin Yang, Zhaoxiang Bian, Fengyun Wang and Xudong Tang
    Citation: Proteome Science 2020 18:1
  21. Chronic Kidney Disease (CKD) is a global health problem annually affecting millions of people around the world. It is a comprehensive syndrome, and various factors may contribute to its occurrence. In this stu...

    Authors: Amir Taherkhani, Reyhaneh Farrokhi Yekta, Maede Mohseni, Massoud Saidijam and Afsaneh Arefi Oskouie
    Citation: Proteome Science 2019 17:7
  22. Polypterus senegalus can fully regenerate its pectoral lobed fins, including a complex endoskeleton, with remarkable precision. However, despite the enormous potential of this species for use in medical research,...

    Authors: Suxiang Lu, Qian Xiong, Kang Du, Xiaoni Gan, Xuzhen Wang, Liandong Yang, Ying Wang, Feng Ge and Shunping He
    Citation: Proteome Science 2019 17:6
  23. In previous study, we performed next-gene sequencing to investigate the differentially expressed transcripts of bovine follicular granulosa cells (GCs) at dominant follicle (DF) and subordinate follicle (SF) s...

    Authors: Shuning Hou, Qingling Hao, Zhiwei Zhu, Dongmei Xu, Wenzhong Liu, Lihua Lyu and Pengfei Li
    Citation: Proteome Science 2019 17:4
  24. The periodontal ligament is essential for homeostasis of periodontal tissue. A hypoxic milieu of the periodontal tissue is generated under periodontitis or during orthodontic treatment, which affects the perio...

    Authors: Qiwen Li, Tao Luo, Wenxin Lu, Xiaoxiao Yi, Zhihe Zhao and Jun Liu
    Citation: Proteome Science 2019 17:3
  25. The rumen microbiota is one of the most complex consortia of anaerobes, involving archaea, bacteria, protozoa, fungi and phages. They are very effective at utilizing plant polysaccharides, especially cellulose...

    Authors: Hana Sechovcová, Lucie Kulhavá, Kateřina Fliegerová, Mária Trundová, Daniel Morais, Jakub Mrázek and Jan Kopečný
    Citation: Proteome Science 2019 17:2
  26. Non-alcoholic fatty liver disease (NAFLD) is caused by excessive accumulation of fat within the liver, leading to further severe conditions such as non-alcoholic steatohepatitis (NASH). Progression of healthy ...

    Authors: Peerut Chienwichai, Onrapak Reamtong, Usa Boonyuen, Trairak Pisitkun, Poorichaya Somparn, Prapin Tharnpoophasiam, Suwalee Worakhunpiset and Supachai Topanurak
    Citation: Proteome Science 2019 17:1
  27. Abiotic stress reduces photosynthetic yield and plant growth, negatively impacting global crop production and is a major constraint faced by agriculture. However, the knowledge on the impact on plants under ex...

    Authors: Débora Parrine, Bo-Sen Wu, Bilal Muhammad, Keith Rivera, Darryl Pappin, Xin Zhao and Mark Lefsrud
    Citation: Proteome Science 2018 16:20
  28. Maize seedlings are constantly exposed to inorganic phosphate (Pi)-limited environments. To understand how maize cope with low Pi (LP) and high Pi (HP) conditions, physiological and global proteomic analysis o...

    Authors: Yanling Sun, Chunhua Mu and Xia Liu
    Citation: Proteome Science 2018 16:19
  29. Calcitonin gene-related peptide (CGRP) contributes to bone formation by stimulating bone marrow stromal cell (BMSC) proliferation and differentiation. However, the proliferative and apoptotic effects of CGRP o...

    Authors: Jianqun Wu, Song Liu, Zhao Wang, Shenghui Ma, Huan Meng and Jijie Hu
    Citation: Proteome Science 2018 16:18
  30. The non-receptor tyrosine kinase, SRMS (Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristoylation sites) is a member of the BRK family kinases (BFKs) which represents an evolution...

    Authors: Raghuveera Kumar Goel, Mona Meyer, Marta Paczkowska, Jüri Reimand, Frederick Vizeacoumar, Franco Vizeacoumar, TuKiet T. Lam and Kiven Erique Lukong
    Citation: Proteome Science 2018 16:16
  31. The sensory epithelium of the inner ear converts the mechanical energy of sound to electro-chemical energy recognized by the central nervous system. This process is mediated by receptor cells known as hair cel...

    Authors: Lancia N. F. Darville and Bernd H. A. Sokolowski
    Citation: Proteome Science 2018 16:15
  32. The practice of dehorning yak raises animal safety concerns, which have been addressed by selective breeding to obtain genetically hornless yak. The POLLED locus in yak has been studied extensively; however, l...

    Authors: Mingna Li, Xiaoyun Wu, Xian Guo, Pengjia Bao, Xuezhi Ding, Min Chu, Chunnian Liang and Ping Yan
    Citation: Proteome Science 2018 16:14
  33. Following publication of the original article [1]

    Authors: Christos Spanos, Elaina M. Maldonado, Ciarán P. Fisher, Petchpailin Leenutaphong, Ernesto Oviedo-Orta, David Windridge, Francisco J. Salguero, Alexandra Bermúdez-Fajardo, Mark E. Weeks, Caroline Evans, Bernard M. Corfe, Naila Rabbani, Paul J. Thornalley, Michael H. Miller, Huan Wang, John F. Dillon…
    Citation: Proteome Science 2018 16:13

    The original article was published in Proteome Science 2018 16:4

  34. Fibroblast growth factor receptor 2 (FGFR2) play a vital role in skeletogenesis. However, the molecular mechanisms triggered by FGFR2 in osteoblasts are still not fully understood. In this study, proteomics an...

    Authors: Tianyi Cai, Baojin Wu, Xinjie Tang, Zhaoping Zhou, Junyi Yang, Ronghu Ke and Xiongzheng Mu
    Citation: Proteome Science 2018 16:12
  35. The shells of various Haliotis species have served as models of invertebrate biomineralization and physical shell properties for more than 20 years. A focus of this research has been the nacreous inner layer of t...

    Authors: Karlheinz Mann, Nicolas Cerveau, Meike Gummich, Monika Fritz, Matthias Mann and Daniel J. Jackson
    Citation: Proteome Science 2018 16:11
  36. Upon publication of the original article [1], Marwa Eltoweissy noticed that her affiliation: “3. Department of Zoology, Faculty of Science, Alexandria University, Alexandria, Egypt” was missing. This affiliati...

    Authors: Gry H. Dihazi, Gerhard A. Mueller, Abdul R. Asif, Marwa Eltoweissy, Johannes T. Wessels and Hassan Dihazi
    Citation: Proteome Science 2018 16:10

    The original article was published in Proteome Science 2015 13:6

  37. Previous studies have shown that lamprey buccal glands contain some regulators related to anticoagulation, nociception, and immune responses due to the blood sucking habit. Regrettably, the protein expression ...

    Authors: Bowen Li, Meng Gou, Jianmei Han, Xiaofei Yuan, Yingying Li, Tiesong Li, Qi Jiang, Rong Xiao and Qingwei Li
    Citation: Proteome Science 2018 16:9
  38. Euphorbia lathyris L., a Traditional Chinese medicine (TCM), is commonly used for the treatment of hydropsy, ascites, constipation, amenorrhea, and scabies. Semen Euphorbiae Pulveratum, which is another type of E...

    Authors: Yu Zhang, Yingzi Wang, Shaojing Li, Xiuting Zhang, Wenhua Li, Shengxiu Luo, Zhenyang Sun and Ruijie Nie
    Citation: Proteome Science 2018 16:8
  39. The aminoglycoside antibiotic gentamicin is an ototoxic drug and has been used experimentally to investigate cochlear damage induced by noise.

    Authors: Elisa Ghelfi, Yohann Grondin, Emil J. Millet, Adam Bartos, Magda Bortoni, Clara Oliveira Gomes dos Santos, Humberto J. Trevino-Villarreal, Rosalinda Sepulveda and Rick Rogers
    Citation: Proteome Science 2018 16:7
  40. The finite marine resources make it difficult for us to obtain enough fish oil (FO) used in aquatic feeds. Another sustainable ingredients should be found to substitute FO. The effects of replacing FO with veg...

    Authors: Banghong Wei, Zhigang Yang, Yongxu Cheng, Jianyi Wang and Junyu Zhou
    Citation: Proteome Science 2018 16:6
  41. Protein kinase C ζ (PKCζ), an isoform of the atypical protein kinase C, is a pivotal regulator in cancer. However, the molecular and cellular mechanisms whereby PKCζ regulates tumorigenesis and metastasis are ...

    Authors: Chunyu Hou, Yuan Li, Huiqin Liu, Mengjiao Dang, Guoxuan Qin, Ning Zhang and Ruibing Chen
    Citation: Proteome Science 2018 16:5
  42. Non-alcoholic fatty liver disease (NAFLD) is the most common liver disease worldwide. However, its molecular pathogenesis is incompletely characterized and clinical biomarkers remain scarce. The aims of these ...

    Authors: Christos Spanos, Elaina M. Maldonado, Ciarán P. Fisher, Petchpailin Leenutaphong, Ernesto Oviedo-Orta, David Windridge, Francisco J. Salguero, Alexandra Bermúdez-Fajardo, Mark E. Weeks, Caroline Evans, Bernard M. Corfe, Naila Rabbani, Paul J. Thornalley, Michael H. Miller, Huan Wang, John F. Dillon…
    Citation: Proteome Science 2018 16:4

    The Correction to this article has been published in Proteome Science 2018 16:13

  43. Epithelial ovarian cancer is the second most lethal gynecological cancer worldwide. Ascites can be found in all clinical stages, however in advanced disease stages IIIC and IV it is more frequent and could be ...

    Authors: Alfredo Toledo-Leyva, Julio César Villegas-Pineda, Sergio Encarnación-Guevara, Dolores Gallardo-Rincón and Patricia Talamás-Rohana
    Citation: Proteome Science 2018 16:3
  44. Acrolein (allyl Aldehyde) as one of smoke irritant exacerbates chronic airway diseases and increased in sputum of patients with asthma and chronic obstructive lung disease. But underlying mechanism remains unr...

    Authors: Pureun-Haneul Lee, Byeong-Gon Kim, Sun-Hye Lee, George D. Leikauf and An-Soo Jang
    Citation: Proteome Science 2018 16:2

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