Volume 10 Supplement 1

Selected articles from the IEEE International Conference on Bioinformatics and Biomedicine 2011: Proteome Science


Edited by Fang-Xiang Wu and Habtom W Ressom

IEEE International Conference on Bioinformatics and Biomedicine 2011. Go to conference site.

Atlanta, GA, USA

12-15 November 2011

  1. Proceedings

    Protein surface representation and analysis by dimension reduction

    Protein structures are better conserved than protein sequences, and consequently more functional information is available in structures than in sequences. However, proteins generally interact with other protei...

    Heng Yang, Rehman Qureshi and Ahmet Sacan

    Proteome Science 2012 10(Suppl 1):S1

    Published on: 21 June 2012

  2. Proceedings

    In-silico identification of phenotype-biased functional modules

    Phenotypes exhibited by microorganisms can be useful for several purposes, e.g., ethanol as an alternate fuel. Sometimes, the target phenotype maybe required in combination with other phenotypes, in order to b...

    Kanchana Padmanabhan, Kevin Wilson, Andrea M Rocha, Kuangyu Wang, James R Mihelcic and Nagiza F Samatova

    Proteome Science 2012 10(Suppl 1):S2

    Published on: 21 June 2012

  3. Proceedings

    Ion annotation-assisted analysis of LC-MS based metabolomic experiment

    Analysis of multiple LC-MS based metabolomic studies is carried out to determine overlaps and differences among various experiments. For example, in large metabolic biomarker discovery studies involving hundre...

    Rency S Varghese, Bin Zhou, Mohammad R Nezami Ranjbar, Yi Zhao and Habtom W Ressom

    Proteome Science 2012 10(Suppl 1):S8

    Published on: 21 June 2012

  4. Proceedings

    Protein sequence classification using feature hashing

    Recent advances in next-generation sequencing technologies have resulted in an exponential increase in the rate at which protein sequence data are being acquired. The k-gram feature representation, commonly used ...

    Cornelia Caragea, Adrian Silvescu and Prasenjit Mitra

    Proteome Science 2012 10(Suppl 1):S14

    Published on: 21 June 2012

  5. Proceedings

    High performance transcription factor-DNA docking with GPU computing

    Protein-DNA docking is a very challenging problem in structural bioinformatics and has important implications in a number of applications, such as structure-based prediction of transcription factor binding sit...

    Jiadong Wu, Bo Hong, Takako Takeda and Jun-tao Guo

    Proteome Science 2012 10(Suppl 1):S17

    Published on: 21 June 2012

  6. Proceedings

    Intrinsic disorder in putative protein sequences

    Intrinsically disordered proteins (IDPs) and regions (IDRs) perform a variety of crucial biological functions despite lacking stable tertiary structure under physiological conditions in vitro. State-of-the-art...

    Uros Midic and Zoran Obradovic

    Proteome Science 2012 10(Suppl 1):S19

    Published on: 21 June 2012