Proteome Science is affiliated with the Korean Human Proteome Organization (KHUPO). KHUPO is a global leader in both domestic and global proteomics research, establishing an industry-academia-government joint cooperation system to effectively carry out global proteome projects and research such as the human genome project.
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Citation: Proteome Science 2018 16:1
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Comparative proteomic analysis between nitrogen supplemented and starved conditions in Magnaporthe oryzae
Fungi are constantly exposed to nitrogen limiting environments, and thus the efficient regulation of nitrogen metabolism is essential for their survival, growth, development and pathogenicity. To understand ho...
Citation: Proteome Science 2017 15:20 -
Proteomic analysis of early salt stress responsive proteins in alfalfa roots and shoots
Alfalfa (Medicago sativa) is the most extensively cultivated forage legume in the world, and salinity stress is the most problematic environmental factors limiting alfalfa production. To evaluate alfalfa tissue v...
Citation: Proteome Science 2017 15:19 -
Iron overload down-regulates the expression of the HIV-1 Rev cofactor eIF5A in infected T lymphocytes
Changes in iron metabolism frequently accompany HIV-1 infection. However, while many clinical and in vitro studies report iron overload exacerbates the development of infection, many others have found no corre...
Citation: Proteome Science 2017 15:18 -
Examining the influence of specificity ligands and ATP-competitive ligands on the overall effectiveness of bivalent kinase inhibitors
Identifying selective kinase inhibitors remains a major challenge. The design of bivalent inhibitors provides a rational strategy for accessing potent and selective inhibitors. While bivalent kinase inhibitors...
Citation: Proteome Science 2017 15:17 -
Daptomycin, a last-resort antibiotic, binds ribosomal protein S19 in humans
Daptomycin is a recently introduced, last-resort antibiotic that displays a unique mode of action against Gram-positive bacteria that is not fully understood. Several bacterial targets have been proposed but n...
Citation: Proteome Science 2017 15:16 -
Tetrazine ligation for chemical proteomics
Determining small molecule—target protein interaction is essential for the chemical proteomics. One of the most important keys to explore biological system in chemical proteomics field is finding first-class m...
Citation: Proteome Science 2017 15:15 -
Photo-affinity labeling (PAL) in chemical proteomics: a handy tool to investigate protein-protein interactions (PPIs)
Protein-protein interactions (PPIs) trigger a wide range of biological signaling pathways that are crucial for biomedical research and drug discovery. Various techniques have been used to study specific protei...
Citation: Proteome Science 2017 15:14 -
Thermal proteome profiling: unbiased assessment of protein state through heat-induced stability changes
In recent years, phenotypic-based screens have become increasingly popular in drug discovery. A major challenge of this approach is that it does not provide information about the mechanism of action of the hit...
Citation: Proteome Science 2017 15:13 -
The hepatocyte proteome in organotypic rat liver models and the influence of the local microenvironment
Liver models that closely mimic the in vivo microenvironment are useful for understanding liver functions, capabilities, and intercellular communication processes. Three-dimensional (3D) liver models assembled...
Citation: Proteome Science 2017 15:12 -
Characterisation of the circulating acellular proteome of healthy sheep using LC-MS/MS-based proteomics analysis of serum
Unlike humans, there is currently no publicly available reference mass spectrometry-based circulating acellular proteome data for sheep, limiting the analysis and interpretation of a range of physiological cha...
Citation: Proteome Science 2017 15:11 -
The effect of microbial challenge on the intestinal proteome of broiler chickens
In poultry production intestinal health and function is paramount to achieving efficient feed utilisation and growth. Uncovering the localised molecular mechanisms that occur during the early and important per...
Citation: Proteome Science 2017 15:10 -
Water deficit mechanisms in perennial shrubs Cerasus humilis leaves revealed by physiological and proteomic analyses
Drought (Water deficit, WD) poses a serious threat to extensively economic losses of trees throughout the world. Chinese dwarf cherry (Cerasus humilis) is a good perennial plant for studying the physiological and...
Citation: Proteome Science 2017 15:9 -
Merging clinical chemistry biomarker data with a COPD database - building a clinical infrastructure for proteomic studies
Data from biological samples and medical evaluations plays an essential part in clinical decision making. This data is equally important in clinical studies and it is critical to have an infrastructure that en...
Citation: Proteome Science 2017 15:8 -
Proteomic profiling of HBV infected liver biopsies with different fibrotic stages
Hepatitis B virus (HBV) is a global health problem, and infected patients if left untreated may develop cirrhosis and eventually hepatocellular carcinoma. This study aims to enlighten pathways associated with ...
Citation: Proteome Science 2017 15:7 -
Disulfide proteomics of rice cultured cells in response to OsRacl and probenazole-related immune signaling pathway in rice
Reactive oxygen species (ROS) production is an early event in the immune response of plants. ROS production affects the redox-based modification of cysteine residues in redox proteins, which contribute to prot...
Citation: Proteome Science 2017 15:6 -
Proteomic analysis of microparticles isolated from malaria positive blood samples
Malaria continues to be a great public health concern due to the significant mortality and morbidity associated with the disease especially in developing countries. Microparticles (MPs), also called plasma mem...
Citation: Proteome Science 2017 15:5 -
Protein profiles of hatchery egg shell membrane
Eggshells which consist largely of calcareous outer shell and shell membranes, constitute a significant part of poultry hatchery waste. The shell membranes (ESM) not only contain proteins that originate from e...
Citation: Proteome Science 2017 15:4 -
Proteome changes in the small intestinal mucosa of growing pigs with dietary supplementation of non-starch polysaccharide enzymes
Non-starch polysaccharide enzymes (NSPEs) have long been used in monogastric animal feed production to degrade non-starch polysaccharides (NSPs) to oligosaccharides in order to promote growth performance and g...
Citation: Proteome Science 2017 15:3 -
Overgrazing induces alterations in the hepatic proteome of sheep (Ovis aries): an iTRAQ-based quantitative proteomic analysis
The degradation of the steppe of Inner Mongolia, due to overgrazing, has resulted in ecosystem damage as well as extensive reductions in sheep production. The growth performance of sheep is greatly reduced bec...
Citation: Proteome Science 2017 15:2 -
An interactomics overview of the human and bovine milk proteome over lactation
Milk is the most important food for growth and development of the neonate, because of its nutrient composition and presence of many bioactive proteins. Differences between human and bovine milk in low abundant...
Citation: Proteome Science 2017 15:1 -
Informed baseline subtraction of proteomic mass spectrometry data aided by a novel sliding window algorithm
Proteomic matrix-assisted laser desorption/ionisation (MALDI) linear time-of-flight (TOF) mass spectrometry (MS) may be used to produce protein profiles from biological samples with the aim of discovering biom...
Citation: Proteome Science 2016 14:19 -
Proteomic based approach for characterizing 4-hydroxy-2-nonenal induced oxidation of buffalo (Bubalus bubalis) and goat (Capra hircus) meat myoglobins
Myoglobin (Mb) is a sarcoplasmic heme protein primarily responsible for meat color and its chemistry is species specific. 4-hydroxy-2-nonenal (HNE) is a cytotoxic lipid derived aldehyde detected in meat and wa...
Citation: Proteome Science 2016 14:18 -
Follicular fluid biomarkers for human in vitro fertilization outcome: Proof of principle
Human follicular fluid (FF) is a unique biological fluid in which the oocyte develops in vivo, and presents an optimal source for non-invasive biochemical predictors. Oocyte quality directly influences the emb...
Citation: Proteome Science 2016 14:17 -
iTRAQ-based proteomic analysis of myofibrillar contents and relevant synthesis and proteolytic proteins in soleus muscle of hibernating Daurian ground squirrels (Spermophilus dauricus)
Daurian ground squirrels (Spermophilus dauricus) deviate from significant increase of protein catabolism and loss of myofibrillar contents during long period of hibernation inactivity.
Citation: Proteome Science 2016 14:16 -
Multi-omics analysis on the pathogenicity of Enterobacter cloacae ENHKU01 isolated from sewage outfalls along the Ningbo coastline
The acquisition of iron is important for the pathogenicity of bacteria and blood. Three different culture environments (Fe stimulation, blood agar plate and normal plate) were used to stimulate Enterobacter cloac...
Citation: Proteome Science 2016 14:15 -
Proteome profiling reveals insights into cold-tolerant growth in sea buckthorn
Low temperature is one of the crucial environmental factors limiting the productivity and distribution of plants. Sea buckthorn (Hippophae rhamnoides L.), a well recognized multipurpose plant species, live succes...
Citation: Proteome Science 2016 14:14 -
Comparative proteomic analyses of Asian cotton ovules with attached fibers in the early stages of fiber elongation process
Plenty of proteomic studies were performed to characterize the allotetraploid upland cotton fiber elongation process, whereas little is known about the elongating diploid cotton fiber proteome.
Citation: Proteome Science 2016 14:13 -
Identifying EGFR mutation-induced drug resistance based on alpha shape model analysis of the dynamics
Epidermal growth factor receptor (EGFR) mutation-induced drug resistance is a difficult problem in lung cancer treatment. Studying the molecular mechanisms of drug resistance can help to develop corresponding ...
Citation: Proteome Science 2016 14:12 -
Removal of SDS from biological protein digests for proteomic analysis by mass spectrometry
Metal-organic frameworks (MOFs - MIL-101) are the most exciting, high profiled developments in nanotechnology in the last ten years, and it attracted considerable attention owing to their uniform nanoporosity,...
Citation: Proteome Science 2016 14:11 -
Differential proteins among normal cervix cells and cervical cancer cells with HPV-16 infection, through mass spectrometry-based Proteomics (2D-DIGE) in women from Southern México
Cervical cancer (CC) is the fourth most common cancer in women worldwide with an estimated 528,000 new cases in 2012. The same year México had an incidence of 13,960 and a mortality of 4769 cases. There are se...
Citation: Proteome Science 2016 14:10 -
Comparative proteome analysis of abdominal adipose tissues between fat and lean broilers
The molecular mechanism underlying broiler fat deposition is still poorly understood.
Citation: Proteome Science 2016 14:9 -
Investigation of proteome changes in osteoclastogenesis in low serum culture system using quantitative proteomics
RAW 264.7 cells can differentiate into osteoclasts when cultured in medium supplemented with 1 % FBS. However, the proteomic changes in the development of RAW 264.7 cells into osteoclasts in low serum culture ...
Citation: Proteome Science 2016 14:8 -
The association of plasma cystatin C proteoforms with diabetic chronic kidney disease
Cystatin C (CysC) is an endogenous cysteine protease inhibitor that can be used to assess the progression of kidney function. Recent studies demonstrate that CysC is a more specific indicator of glomerular fil...
Citation: Proteome Science 2016 14:7 -
Stathmin involvement in the maternal embryonic leucine zipper kinase pathway in glioblastoma
Maternal Embryonic Leucine Zipper Kinase (MELK) is a serine/threonine kinase involved in cell cycle, differentiation, proliferation, and apoptosis. These multiple features are consistent with it being a potent...
Citation: Proteome Science 2016 14:6 -
Analysis of the immune response of human dendritic cells to Mycobacterium tuberculosis by quantitative proteomics
The cellular immune response for Mycobacterium tuberculosis (M. tuberculosis) infection remained incompletely understood. To uncover membrane proteins involved in this infection mechanism, an integrated approach ...
Citation: Proteome Science 2016 14:5 -
Label-free proteomic methodology for the analysis of human kidney stone matrix composition
Kidney stone matrix protein composition is an important yet poorly understood aspect of nephrolithiasis. We hypothesized that this proteome is considerably more complex than previous reports have indicated and...
Citation: Proteome Science 2016 14:4 -
Quantitative succinylome analysis in the liver of non-alcoholic fatty liver disease rat model
Non-alcoholic fatty liver disease (NAFLD) is a clinical frequent disease. However, its pathogenesis still needs further study, especially the mechanism at the molecular level. The recent identified novel prote...
Citation: Proteome Science 2016 14:3 -
Secretome analysis of rice suspension-cultured cells infected by Xanthomonas oryzae pv.oryza (Xoo)
Rice bacterial blight (BB) caused by Xanthomonas oryzae pv.oryzae (Xoo) is one of the most devastating bacterial diseases in rice-growing regions worldwide. The rice-Xoo interaction is a classical model for study...
Citation: Proteome Science 2016 14:2 -
Isolation and characterization of Bradykinin potentiating peptides from Agkistrodon bilineatus venom
Snake venom is a source of many pharmacologically important molecules. Agkistrodon bilineatus commonly known as Cantil, is spread over Central America particularly in Mexico and Costa Rica. From the venom of Agki...
Citation: Proteome Science 2016 14:1 -
Analysis of protein expression in periodontal pocket tissue: a preliminary study
The periodontal disease is caused by a set of inflammatory disorders characterized by periodontal pocket formation that lead to tooth loss if untreated. The proteomic profile and related molecular conditions o...
Citation: Proteome Science 2015 13:33 -
Gender-specific effects of intrauterine growth restriction on the adipose tissue of adult rats: a proteomic approach
Intrauterine growth restriction (IUGR) may program metabolic alterations affecting physiological functions and lead to diseases in later life. The adipose tissue is an important organ influencing energy homeos...
Citation: Proteome Science 2015 13:32 -
Hepatocytes respond differently to major dietary trans fatty acid isomers, elaidic acid and trans-vaccenic acid
It has been discussed if the adverse health effect associated with the ingestion of trans fatty acids correlates with the food source, as the composition of the isomers varies in different foods. We have investig...
Citation: Proteome Science 2015 13:31 -
Alteration of actin dependent signaling pathways associated with membrane microdomains in hyperlipidemia
Membrane microdomains represent dynamic membrane nano-assemblies enriched in signaling molecules suggesting their active involvement in not only physiological but also pathological molecular processes. The hyp...
Citation: Proteome Science 2015 13:30 -
The calcified eggshell matrix proteome of a songbird, the zebra finch (Taeniopygia guttata)
The proteins of avian eggshell organic matrices are thought to control the mineralization of the eggshell in the shell gland (uterus). Proteomic analysis of such matrices identified many candidates for such a ...
Citation: Proteome Science 2015 13:29 -
Differential abundance analysis of mesocarp protein from high- and low-yielding oil palms associates non-oil biosynthetic enzymes to lipid biosynthesis
The oil palm Elaeis guineensis Jacq. which produces the highest yield per unit land area of the oil crops is the most important commercial oil crop in South East Asia. The fleshy mesocarp of oil palm fruit, where...
Citation: Proteome Science 2015 13:28 -
A quantitative shotgun proteomics analysis of germinated rice embryos and coleoptiles under low-temperature conditions
At low temperatures, rice grains have a reduced germination rate and grow more slowly, which delays the emergence of rice seedlings from the paddy water surface and significantly increases seedling mortality. ...
Citation: Proteome Science 2015 13:27 -
Long-term consequences of in utero irradiated mice indicate proteomic changes in synaptic plasticity related signalling
The harmful consequences of in utero irradiation on learning and memory have been recognised but the molecular mechanisms behind the damage are still unknown.
Citation: Proteome Science 2015 13:26 -
Proteomic analysis of Pteropus alecto kidney cells in response to the viral mimic, Poly I:C
Bats are recognised as an important reservoir for a number of highly pathogenic zoonotic viruses. While many of these viruses cause severe and often fatal disease in humans, bats are able to coexist with these...
Citation: Proteome Science 2015 13:25 -
Profiling post-translational modifications of histones in human monocyte-derived macrophages
Histones and their post-translational modifications impact cellular function by acting as key regulators in the maintenance and remodeling of chromatin, thus affecting transcription regulation either positivel...
Citation: Proteome Science 2015 13:24
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Journal Impact Factor: 2.1
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Source Normalized Impact per Paper (SNIP): 0.430
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