Volume 9 Supplement 1

Selected articles from the IEEE International Conference on Bioinformatics and Biomedicine 2010


Edited by Fang-Xiang Wu, Xiaohua Hu and Bin Ma

IEEE International Conference on Bioinformatics and Biomedicine 2010. Go to conference site.

Hong Kong, China

18-21 December 2010

  1. Proceedings

    Processing methods for signal suppression of FTMS data

    Fourier Transform Mass Spectrometry coupled with Liquid Chromatography(LC-FTMS) has been widely used in proteomics. Past investigation has revealed that there exists an intensity dependent random suppression i...

    Xuepo Ma, Jian Cui and Jianqiu Zhang

    Proteome Science 2011 9(Suppl 1):S2

    Published on: 14 October 2011

  2. Proceedings

    ATPsite: sequence-based prediction of ATP-binding residues

    ATP is a ubiquitous nucleotide that provides energy for cellular activities, catalyzes chemical reactions, and is involved in cellular signalling. The knowledge of the ATP-protein interactions helps with annot...

    Ke Chen, Marcin J Mizianty and Lukasz Kurgan

    Proteome Science 2011 9(Suppl 1):S4

    Published on: 14 October 2011

  3. Proceedings

    Prediction of 492 human protein kinase substrate specificities

    Complex intracellular signaling networks monitor diverse environmental inputs to evoke appropriate and coordinated effector responses. Defective signal transduction underlies many pathologies, including cancer...

    Javad Safaei, Ján Maňuch, Arvind Gupta, Ladislav Stacho and Steven Pelech

    Proteome Science 2011 9(Suppl 1):S6

    Published on: 14 October 2011

  4. Proceedings

    A new method for alignment of LC-MALDI-TOF data

    In proteomics studies, liquid chromatography coupled to mass spectrometry (LC-MS) has proven to be a powerful technology to investigate differential expression of proteins/peptides that are characterized by th...

    Zhiqun Tang, Lihua Zhang, Amrita K Cheema and Habtom W Ressom

    Proteome Science 2011 9(Suppl 1):S10

    Published on: 14 October 2011

  5. Proceedings

    Sequence and structural features of binding site residues in protein-protein complexes: comparison with protein-nucleic acid complexes

    Protein-protein interactions are important for several cellular processes. Understanding the mechanism of protein-protein recognition and predicting the binding sites in protein-protein complexes are long stan...

    M Michael Gromiha, N Saranya, S Selvaraj, B Jayaram and Kazuhiko Fukui

    Proteome Science 2011 9(Suppl 1):S13

    Published on: 14 October 2011

  6. Proceedings

    Decomposing PPI networks for complex discovery

    Protein complexes are important for understanding principles of cellular organization and functions. With the availability of large amounts of high-throughput protein-protein interactions (PPI), many algorithm...

    Guimei Liu, Chern Han Yong, Hon Nian Chua and Limsoon Wong

    Proteome Science 2011 9(Suppl 1):S15

    Published on: 14 October 2011

  7. Proceedings

    Applications of graph theory in protein structure identification

    There is a growing interest in the identification of proteins on the proteome wide scale. Among different kinds of protein structure identification methods, graph-theoretic methods are very sharp ones. Due to ...

    Yan Yan, Shenggui Zhang and Fang-Xiang Wu

    Proteome Science 2011 9(Suppl 1):S17

    Published on: 14 October 2011

  8. Proceedings

    A binary matrix factorization algorithm for protein complex prediction

    Identifying biologically relevant protein complexes from a large protein-protein interaction (PPI) network, is essential to understand the organization of biological systems. However, high-throughput experimen...

    Shikui Tu, Runsheng Chen and Lei Xu

    Proteome Science 2011 9(Suppl 1):S18

    Published on: 14 October 2011

  9. Proceedings

    SProt: sphere-based protein structure similarity algorithm

    Similarity search in protein databases is one of the most essential issues in computational proteomics. With the growing number of experimentally resolved protein structures, the focus shifted from sequences t...

    Jakub Galgonek, David Hoksza and Tomáš Skopal

    Proteome Science 2011 9(Suppl 1):S20

    Published on: 14 October 2011